Sequence
atgc intronic sequence ATGC exonic sequencegtatgatctgataaaccaattttttctttttaatatttagttgattgagtactgcaaacataattgttcagattcttgctgcagAATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTGATCTCTTTTGGATTTGCTGGACAAGGACGTGCAATAATGCGTGGCCCCA
Basic information
species | Glycine max |
transcript | GLYMA07G09820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G09820.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os01g52170.1 (Oryza sativa), 3'ss of exon 6
gtatgatctgataaaccaattttttctttttaatatttagttgattgagtactgcaaacataattgttcagattcttgctgcagAATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTGATCTCTTTTGGATTTGCTGGACAAGGACGTGCAATAATGCGTGGCCCCA
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--gtaagctgattgaataattgtgt-----taacaaaaaattagt--ggttgcactaataatggtaaacagatttac-ctttagAACCCAGAAAGCAGAAGTATTCTTCCAACCGAGTATTTGGGCGTCAAGATGGTGTCTTTTGGCTTTGCTGGACAAGGAAGAGCTATAATGCGTGGTCCAA
upper sequence: GLYMA07G09820.1 (Glycine max), 3'ss of exon 6
lower sequence: AT3G24430.1 (Arabidopsis thaliana), 3'ss of exon 5
gtatgatctgataaaccaattttttctttttaatatttagttgattgagtactgcaaacataattgttcagattcttgctgcagAATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTGATCTCTTTTGGATTTGCTGGACAAGGACGTGCAATAATGCGTGGCCCCA
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gtaatattctctgactca-ccttgtgatagcagtaac-acacaaaggactaatgtttttcgagttctgtatatgttcaat--agAACCCGGAGAAGAAGACCATCATTCCAACAGAATACATGGGCGTCAAGCTAGTCTCATTTGGATTTGCAGGACAAGGGCGTGCCATTATGAGAGGTCCTA
upper sequence: GLYMA07G09820.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0016g04250.t01 (Vitis vinifera), 3'ss of exon 5
gtatgatctgataaaccaattttttctttttaatatttagttgattga--gtactgcaaacataattgttcagattcttgctgcagAATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTGATCTCTTTTGGATTTGCTGGACAAGGACGTGCAATAATGCGTGGCCCCA
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-------gtagtattccaagtttttgatt--agctttccatgtattgatggtgctgtgcttacaaccatgaaaatctt--ctttagAACCCAGAGAAGAGAAGCATAATTCCAACTGAGTACTTGGGAGTCAAGCTGGTATCTTTTGGTTTTGCCGGACAAGGTCGTGCAATAATGCGAGGTCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51345383|gb|CO986116.1|CO986116EST: GTCCAAGCTTACCGACTATGGTCTCTCCTGAAAACCGACTGTTAGTAATG AATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTG
genomic: GTCCAAGCTTACCGACTATGGTCTCTCCTGAAAACCGACTGTTAGTAATGgtatgatctg ... cttgctgcagAATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaatatttagttgattgagtactgcaaacataattgttcagattcttgctgcagAATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTGATCTCTTTTGGATTTGCTGGACAAGGACGTGCAATAATGCGTGGCCCCA
ttcttgct CT-rich tract
aaacataatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgatctgataaaccaattttttctttttaatatttagttgattgagtactgcaaacataattgttcagattcttgctgcagAATCCAGAGAAGAAGACCATAATTCCTACTGAATACTTGGGAGTAAAGTTGATCTCTTTTGGATTTGCTGGACAAGGACGTGCAATAATGCGTGGCCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA