1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taagttaaagaatcaaaacaagtggcttgttttaccacattactaaatgtaaagtatgctcattaaattctcatgttgtaaatattactttctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
species | Glycine max |
transcript | GLYMA07G09180.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCAAGGAGAGAAGAGTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|120493761|gb|EH221928.1|EH221928
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|120493651|gb|EH221818.1|EH221818
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|7685006|gb|AW755654.1|AW755654
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|19348059|gb|BM892591.1|BM892591
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|192312979|gb|FK004625.1|FK004625
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|16345287|gb|BI970882.1|BI970882
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|31464669|gb|CD406682.1|CD406682
genomic: ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|4287805|gb|AI441242.1|AI441242
genomic: GTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|23053843|gb|BU577597.1|BU577597
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|192312980|gb|FK004626.1|FK004626
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|31463138|gb|CD405166.1|CD405166
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGAGATGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|21677113|gb|BQ629464.1|BQ629464
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|192301762|gb|FG997662.1|FG997662
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCGEST: gi|19348345|gb|BM892877.1|BM892877
genomic: ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: G---A-G-AGA-A-GACTTGTATATTCCCTGAAGACCCCGGTCAG CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
aatgtaaagtatgctcattaaattctcatgttgtaaatattactttctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
tactaaa putative branch site (score: 1)
ttactttct putative PPT
ttgtaaatattacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagttaaagaatcaaaacaagtggcttgttttaccacattactaaatgtaaagtatgctcattaaattctcatgttgtaaatattactttctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA