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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagatgaacaaagcattggtttacataaattgtctattctcgcacagatagaagagattttcactgacttgttttttctgtttgattctagAATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCAGGGCTAATAACGTTCTATGGGTTGACACATCCGCTAGATAAATCATGGCATGTACTTG

Basic information

species Glycine max
transcript GLYMA07G08910.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237171|gb|BE806059.1|BE806059
EST:     TGTGGAAAAAGAAGGATATCACCGGCATATATCACAAGTGGCAGAATATG                         AATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCAGGGCTAATA
genomic: TGTGGAAAAAGAAGGATATCACCGGCATATATCACAAGTGGCAGAATATGgtaagcagat ... ttgattctagAATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCAGGGCTAATA
EST: gi|193344726|gb|FK313228.1|FK313228
EST:     ACAAGTGGCAGAATATG                         AATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCGGGGCTAATA
genomic: ACAAGTGGCAGAATATGgtaagcagat ... ttgattctagAATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCAGGGCTAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcgcacagatagaagagattttcactgacttgttttttctgtttgattctagAATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCAGGGCTAATAACGTTCTATGGGTTGACACATCCGCTAGATAAATCATGGCATGTACTTG
                               cttgttttttctgttt  CT-rich tract
                                ttgtttttt  TA-rich tract