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...tctagaaaaatggacatgagtaacttgtaactgtacactgcttaaaacttttctctatattatgaaagtggatggaactgacttgtgatgcatatgatagGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAGGTGTTG
species | Glycine max |
transcript | GLYMA07G08320.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTG GTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAGEST: gi|208275795|gb|GE074257.1|GE074257
genomic: ATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTGgtaagattct ... catatgatagGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAG
EST: TGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTG GTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAG
genomic: TGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTGgtaagattct ... catatgatagGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAG
aacttttctctatattatgaaagtggatggaactgacttgtgatgcatatgatagGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAGGTGTTG
aactgac putative branch site (score: 2)
tctatattatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctagaaaaatggacatgagtaacttgtaactgtacactgcttaaaacttttctctatattatgaaagtggatggaactgacttgtgatgcatatgatagGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAGGTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- -agaaaaa
- - - - - - -acatgag
- - - - - - - - - - - - - gtaactg
- - - - - - - - - - - - - - - - - -cactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgtg