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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccatataacagattttttgttagttttgtccttctttcttatgttcaacactaatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtagGGAGAGTGACACCAGAAAGTGTAATATATAGCTTTGGAACCCTTTTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT

Basic information

species Glycine max
transcript GLYMA07G07850.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07850.2 (Glycine max), 3'ss of exon 6
lower sequence: AT4G00710.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgccatataacagattttttgttagttttgtccttctttcttatgttcaacactaatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtagGGAGAGTGACACCAGAAAGTGTAATATATAGCTTTGGAACCCTTTTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT
                                                                            |||   ||||    |||| | |||  ||| || |  |  |    |  |||   || |       | ||| |  |||| ||  |  ||||||| | || ||||| ||||||||||| |||||||| || ||| ||||||| |||||||| || || ||||| || || || |||
----------------------------------------------------------------------------gtacatcattggttttttctccaag-attcatatggt--tgagattaagttgcacgt-----tctgtttgttattgtatt--tacagGGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTGATCTTCTCAGCGGAAAACATATACCTCCTAGCCAT

upper sequence: GLYMA07G07850.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 3'ss of exon 6
gtatgccatataacagattttttgttagttttgtccttctttcttatgttcaacactaatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtagGGAGAGTGACACCAGAAAGTGTAATATATAGCTTTGGAACCCTTTTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT
                                                            |||  ||  | | |||||||   || |||   | |   ||| || |||| | |  |  | |  |   |    | | ||| |||   | ||| || || | |||| ||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||||| ||||||||||| || || |||
-----------------------------------------------------------gatttgatgtagagtctgtatcagatataa---tataggaataatatatggtattttgtaatctaactaatttttgcttcatatgcttgttt-ttgttctatagGAAGAGTAACACCAGAAAGTGTAATATATAGCTTCGGCACTCTTTTGCTTGACCTGCTCAGTGGAAAGCATATCCCTCCCAGCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtagGGAGAGTGACACCAGAAAGTGTAATATATAGCTTTGGAACCCTTTTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT
                           tttcttatttctcttt  CT-rich tract
                                        tttgtttttttgta  TA-rich tract