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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaaatcatcacctacacactcaacagttttgagattgttcattttatacttatctatgcagttctttctctcgtttctcctaactgtggaagttggaattattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAAGGCTCTTA

Basic information

species Glycine max
transcript GLYMA07G07250.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348962|gb|BI974557.1|BI974557
EST:     AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAGgttagaaatc ... attattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|151404308|gb|EV274118.1|EV274118
EST:     AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAGgttagaaatc ... attattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|11413881|gb|BF425892.1|BF425892
EST:     AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCNAAAATCTGAG
genomic: AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAGgttagaaatc ... attattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|37994187|gb|CF805933.1|CF805933
EST:     AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAGgttagaaatc ... attattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|11413988|gb|BF426063.1|BF426063
EST:     AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAGgttagaaatc ... attattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
EST: gi|51335712|gb|CO979578.1|CO979578
EST:     AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAG                         GTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG
genomic: AATTAATTACTGGAAGAAGTCCTGTGGATTATAGTAAACCACAAGGAGAGgttagaaatc ... attattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatgcagttctttctctcgtttctcctaactgtggaagttggaattattgcagGTTAATTTAATAGAGTGGTTGAAAAGTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGATTGCTGAAAAGCCATCTTCAAAGGCTCTTA
                         tcctaac  putative branch site (score: 1)
                                            aattatt  TA-rich tract