1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttgtagcatatcctaaccttgttttctctttcagacattatggaattcattgctaattttgagatgatgtatctttttcagGTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAATAAAGCCTTACTGGAGTATAAGGAGGACGTGATAAATGGTTCATTTCCTG
species | Glycine max |
transcript | GLYMA07G06950.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCAAAG GTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAATEST: gi|13480471|gb|BG509814.1|BG509814
genomic: TAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCAAAGgtatttgtag ... tctttttcagGTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAAT
EST: TAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCANAG GTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAATEST: gi|17023353|gb|BM094387.1|BM094387
genomic: TAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCAAAGgtatttgtag ... tctttttcagGTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAAT
EST: TAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCAAAG GTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAAT
genomic: TAGTTTACCATGATCTGCTTGGTATGCTACAACACCCTCACCATGCAAAGgtatttgtag ... tctttttcagGTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAAT
tctttcagacattatggaattcattgctaattttgagatgatgtatctttttcagGTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAATAAAGCCTTACTGGAGTATAAGGAGGACGTGATAAATGGTTCATTTCCTG
tgctaat putative branch site (score: 2)
tatctttttc putative PPT
taattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgtagcatatcctaaccttgttttctctttcagacattatggaattcattgctaattttgagatgatgtatctttttcagGTTACTCCAAAATTTTGTAAGCAGTATGCACGTGTAGGAGATGTCATCAATAAAGCCTTACTGGAGTATAAGGAGGACGTGATAAATGGTTCATTTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA