Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcttaaaagatgcattagatcatagatgcataagttcacttctttgctttatctttttctcatttccctgcagtattctttaacaccatttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTTTATCA

Basic information

species Glycine max
transcript GLYMA07G06230.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06230.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 5
gtcttaaaagatgcattagatcatagatgcataagttcacttctttgctttatctttttctcatttccctgcagtattctttaacaccatttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTTTATCA-----
    |    |||| || |     |  ||       ||      ||||   |||| |||| | ||||   | || |||| ||||| ||   |||||| | ||||||| |||||| |||| ||||| ||||| || || || || ||||| || || ||  | ||||||||||||||||| ||||||||||||||  ||||      
-ctcttggtgatg-atcaccaatttaatatggttattaggcattttgg--tatcattttatgatttttat-cattattatttaagactgcttgttttcggtgcagTTAACAACTTACCAATGGGATATCCCGTTCTTCAACAACCTCCTATCCCGGCTCCTGGTCAACCTCATATTGATTCCATGGGTTGTGGAATATCCAGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401879|gb|BM178661.1|BM178661
EST:     GTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC--                         T---GTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCAT
genomic: GTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTGgtaaattctt ... ttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCAT
EST: gi|120497096|gb|EH225263.1|EH225263
EST:     CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCCTG
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: gi|308222668|gb|HO760643.1|HO760643
EST:     CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCC-AATGCCTG
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: gi|9204008|gb|BE330232.1|BE330232
EST:     TGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC--
genomic: TGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: gi|302141431|gb|HO212307.1|HO212307
EST:     CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCC-AATGCCTG
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: gi|120495877|gb|EH224044.1|EH224044
EST:     CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC--
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG
EST: gi|19452386|gb|BM953796.1|BM953796
EST:     CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCAT-CCAATGCC--
genomic: CAATCATTTACTTGAGCATCAGTATCATCTCATGAAGTGTCCAATGCCTGCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCATCCCAATGCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttatctttttctcatttccctgcagtattctttaacaccatttgtttgcagTGCAGTCAACAACCTACCTATGGGGTATCCAGTGCTACAGCAGCCTCCCATGCCAGCAACAGGTCAACCTCATATTGACTCCATGGGTTGTGGTTTATCA
                                 ctttaac  putative branch site (score: 3)
                                            tttgttt  putative PPT
                             tattctttaa  TA-rich tract