1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acgtcaatgtgtgactattagatgatagtgtaaaatattgatgtatacataatttagtctagtatttatcacatggtaaccaaactagtgctcgtgacagGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTTTTCTTGGCATCAATCTTGTGAGTGATGGTCACA
species | Glycine max |
transcript | GLYMA07G05890.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATGATCCTCTAATAAGTTCTTGGGTTCTTTTCCGTTATCTG GTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTCTTGTGG
genomic: TGATGATCCTCTAATAAGTTCTTGGGTTCTTTTCCGTTATCTGgtaggtttaa ... ctcgtgacagGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTCTTGTGG
tacataatttagtctagtatttatcacatggtaaccaaactagtgctcgtgacagGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTTTTCTTGGCATCAATCTTGTGAGTGATGGTCACA
tggtaac putative branch site (score: 2)
tagtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgtcaatgtgtgactattagatgatagtgtaaaatattgatgtatacataatttagtctagtatttatcacatggtaaccaaactagtgctcgtgacagGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTTTTCTTGGCATCAATCTTGTGAGTGATGGTCACA
- - - -tgtgtga
- - - - - - - - - - - -gatagtg
- - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaact