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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgaattttattttacactttgattagaatttgtttttatgttgttttaatgtacggactgttgtgtcgtctatgaaaaacatttaatgcagATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTGAATTAACAGAGTTAAGGCCAGAACAAGACTGTGGTGTTGCTGAACCTGA

Basic information

species Glycine max
transcript GLYMA07G05530.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021964|gb|BM092998.1|BM092998
EST:     GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAG                         ATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
genomic: GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAGgtatgcgaat ... tttaatgcagATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
EST: gi|151398241|gb|EV268119.1|EV268119
EST:     GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAG                         ATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
genomic: GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAGgtatgcgaat ... tttaatgcagATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
EST: gi|151400196|gb|EV270010.1|EV270010
EST:     GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAG                         ATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
genomic: GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAGgtatgcgaat ... tttaatgcagATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
EST: gi|15815123|gb|BI787398.1|BI787398
EST:     GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAG                         ATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
genomic: GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAGgtatgcgaat ... tttaatgcagATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
EST: gi|18734852|gb|BM528422.1|BM528422
EST:     GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAG                         ATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG
genomic: GTTTGCCCAATTTGAAAGGGAATCAGCTGAGCATAATGATGAAACAGAAGgtatgcgaat ... tttaatgcagATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgttgttttaatgtacggactgttgtgtcgtctatgaaaaacatttaatgcagATAAATCAGTTACAATTGTATCAGATGCTGCAAGGTGCGACAAAACTTCTGAATTAACAGAGTTAAGGCCAGAACAAGACTGTGGTGTTGCTGAACCTGA
                                  tatgaaaaacatttaa  TA-rich tract