ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaacccatattacaatttaatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

Basic information

species	Glycine max
transcript	GLYMA07G05170.1
intron #	6
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os06g09330.2 (Oryza sativa), 3'ss of exon 2

-----------------------------------gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaacc-catattacaatttaatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
                                    || || |  |||        | || |  |  |||| | | ||   |||     |   |||||||        |      | |  |  ||||||||||||||| |||  ||||||||| |||||||||||  ||||
gtaagttaatatgatcatattttttttactttattatatgcaaggtttatcccgtgatcagattatgattacttttatatttaatgatttgaaacaatttccatcacttttaatttattatgtttttgcagTTCATCCGGAATCTTGGAATCCTATGTGGTCTGTGGCAAG

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G116919_T01 (Zea mays), 3'ss of exon 5

---gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaacccatattacaattt--aatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
       |  |  |     |  |  ||    |||        |  ||| | |   | ||  |  |||  ||||   ||      ||   | |||||||||||||||| |||  ||||||||| |||||||||||  ||||
ccaccccggcaaatgcggagaggctgctttgaacctgggacctagtgattcagtgagatagctctttgaaataacgctcattatttcattgcttttgcagTTCATCCTGAATCTTGGAATCCGATGTGGTCTGTTGCAAG

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G116919_T02 (Zea mays), 3'ss of exon 5

---gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaacccatattacaattt--aatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG------------------------------------------------------------
       |  |  |     |  |  ||    |||        |  ||| | |   | ||  |  |||  ||||   ||      ||   | |||||||||||||||| |||  ||||||||| |||||||||||  ||||                                                            
ccaccccggcaaatgcggagaggctgctttgaacctgggacctagtgattcagtgagatagctctttgaaataacgctcattatttcattgcttttgcagTTCATCCTGAATCTTGGAATCCGATGTGGTCTGTTGCAAGGTACACATATACCAATAACTAGCTTATTACATGAACAGTAATGTTTTTTTGGAAGACATA

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G177276_T01 (Zea mays), 3'ss of exon 5

gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaaccc-atattacaatttaatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
||||| | |    |   |||| |   | |     |  | | || | || | |   | ||    | | |||| |   |           ||||||||||||||| |||  ||||||||| |||||||||||  ||||
gtaagttctgaacttgcttgtggattatagatgcttttgttattattagctctgaaataatgctcattattacaatg-----------ttttgcagTTCATCCTGAATCTTGGAATCCAATGTGGTCTGTTGCAAG

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G17280.1 (Arabidopsis thaliana), 3'ss of exon 6

gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaacccatattacaatttaatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
|||||     | | |  ||   |  ||    | || ||||||  | ||||   | | | |    ||||  |   |  |        | ||| |||||||||||||||| |||||||| |||||||||||||||||
gtaaggacaatctgcactttctgttcat--tatttcgtatca--attaacttgtctaatatcgaaataagttgacatgg-------catttacagTTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAG

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G50430.2 (Arabidopsis thaliana), 3'ss of exon 6

gtaagc-tattttttctgttgtagcacaaaacaattagtatcatgagtaacccatattacaatttaatatttctgcgggat--ttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
||||||  | | ||  | ||    |        |||| | |||  |  |||   | |   |  | | ||  | |         |   | | | | |||||||||||||||| |||||||| |||||||| || |||||
gtaagcacagtcttcattttcattcctttgtttattaatttca--atgaacttgtctgttatctaattagctttatcattccatcattccatgtacagTTCATCCAGAAAGCTGGAATCCAATGTGGTCAGTGTCAAG

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g00280.t01 (Vitis vinifera), 3'ss of exon 7

gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaacccatattacaatttaatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
|||||    ||  | | |  ||| |   || |     | | ||   ||    | |     |||| || ||         | || ||||||| |||||||||||||||| ||||| || |||||||||||||||||
gtaagtctcttgctgtttcatag-atggaaaatcctttcttatttata-tttagaagttgattttattttcacttttattctgttacttttccagTTCATCCAGAAAGCTGGAACCCAATGTGGTCTGTATCAAG

upper sequence: GLYMA07G05170.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S366_17V6.1 (Physcomitrella patens), 3'ss of exon 5

-------------------------------------------------------------------------------------------------------gtaagctattttttctgttgtagcacaaaacaattagtatcatgagtaacccatattacaatttaatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
                                                                                                         ||    |   || | |     ||      |  | || |     ||  ||   |     | | | ||  |     ||||         || ||||||||||||| | ||||||||| ||||||||||| |||||
gtacgtactcgtgccgttatttccttgtatttcagtttgcactgcttctggtctgtgagtagctcattttcaggataagtccactgcaaatattttttcttgttgaattcctcccttttatccctacatgtggaatgttgtgtttctggtgccctggaaatgtactgagtacatgaaatggatcgaaatgcgtttcagTTCATCCAGAGACTTGGAATCCAATGTGGTCTGTTTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|213589359|gb|DB961692.1|DB961692

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATG

EST: gi|193367615|gb|FK332077.1|FK332077

EST:     AATGGACGGTTCATGACACAGAAAAAGATCTGTTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATAAAG
genomic: AATGGACGGTTCATGACACAGAAAAAGATCTGTTT-GTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|208189947|gb|GD990021.1|GD990021

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|193362954|gb|FK327934.1|FK327934

EST:     TAATGGACGGTTCATGACACAGAAAAAGNTCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATAAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|120495095|gb|EH223262.1|EH223262

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|24205463|gb|BU964716.1|BU964716

EST:     TAATGGACGGTTCATGACACACAAAAAGATCTGTTTGTCTATGAGAGACT                         TTCATCCAAAAAGTTGGAATCCCATGTGG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGG

EST: gi|208045851|gb|GD847707.1|GD847707

EST:     TAATGGACGGTTCATGACACAGAAAAAGNTCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|207707971|gb|GD692496.1|GD692496

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCA
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCA

EST: gi|208275347|gb|GE075615.1|GE075615

EST:     CGGTTCATGACACAAG-AAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: CGGTTCATGACAC-AGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|9902562|gb|BE611593.1|BE611593

EST:     TAATGGACGGTTCATGACACAGAANAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|7692130|gb|AW760244.1|AW760244

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|120491908|gb|EH220075.1|EH220075

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|193440118|gb|FK408519.1|FK408519

EST:     AATGGACGGTTCATGACACAAGAAAA-GATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: AATGGACGGTTCATGACACA-GAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

EST: gi|9264559|gb|BE352706.1|BE352706

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGT
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGT

EST: gi|192331929|gb|FK026713.1|FK026713

EST:     TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACT                         TTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG
genomic: TAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGTGACTgtaagctatt ... acttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

catgagtaacccatattacaatttaatatttctgcgggatttgctacttttgcagTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAG

                                           ctactttt  CT-rich tract
            atattacaatttaata  TA-rich tract

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments