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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatctataaatgatgaaaaatttgcttacatatgcttctttgcttggcatcataagaattgccaattgttgacttatctattgtaattgatggattgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCT

Basic information

species Glycine max
transcript GLYMA07G03210.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03210.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv16s0039g01590.t01 (Vitis vinifera), 3'ss of exon 8
tatctataaatgatGAAAAATTTGCTTACATATGCTTCTTTGCTTGGCATCATAAGA--ATTGCCAATTGTTGACTT-ATCTATTG-TAATTGATGGATTGCAGGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCT
   | || |    |  |     |  || ||  |       |   | |   ||||||   |||   ||| |   | || ||| |||  |||||  ||| |||||||| |||||||| || ||||| ||  |||||||||||||||| || || ||||| ||||| ||||  || ||||| || |||||||| ||||| ||| | |
---caatgatcagttgagcggatttttgcagttctaaaaatagattgtgacataagtgcatttataatcgacaattttatcgatttctaatttgtgg-ttgcagGAGAAATTTGCTTCAATGATCGCAAATGCAGGGTTTCAGAAGGTTGAATATGAAAATCTTGTTGGTGGGGTGGTGGCAATCCATTCTGGGTTGAAATTTT

upper sequence: GLYMA07G03210.2 (Glycine max), 3'ss of exon 6
lower sequence: PP1S47_222V6.1 (Physcomitrella patens), 3'ss of exon 7
--tatctataaatgatGAAAAATTTGCTTACATATGCT-TCTTTGCTTGGCATCATAAGAATTGCCAATTGTTGACTTATCTATTGTAATTGATGGATTGCAGGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCT
    ||| |    |   | ||  | | ||   ||||    |  |     | |     ||  |   ||    || | ||    |  ||  ||  |    ||||||||||||||||||| |||||||| |||||||| ||  |  | ||  | ||||||||| | || |  ||||| || ||||| ||||| || || ||| | |
tggctctgtgttcgcatagaaggtagtttgattatgaaacccctatcacgaactcggagtctcatcatcaattaattt---caaggtgttttcttttatgcagGAAAAATTTGCATCTATGATTGCTGATGCAGGTTTCAAAGATGTGCAATATGAGAATTTGGTGGGTGGAGTAGTCGCTATACATTCTGGTTTTAAATTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193306695|gb|FK270521.1|FK270521
EST:     GGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAG                         GAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTAT
genomic: GGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAGgttatcacag ... tggattgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTAT
EST: gi|193439683|gb|FK405886.1|FK405886
EST:     GGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCACACAG                         GAAAAATTTGCATCGATGATTGCGGATGCAGGGTT
genomic: GGGAATCCTATCAGTACTTAGTTGAGAGTATCCGCCGTTTCCCCTCACAGgttatcacag ... tggattgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcatcataagaattgccaattgttgacttatctattgtaattgatggattgcagGAAAAATTTGCATCGATGATTGCGGATGCAGGGTTTCAGAAAGTAGAGTATGAGAATCTAGTTGCGGGAGTGGTTGCTATCCATTCAGGGTTAAAAATCT
                            ttatctattgtaatt  TA-rich tract