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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatgtttctccctcatattttatactaccctgcaagctattgagtgttagtgatagagcatgtagctaaagtgtcaccaattttaatgtatgtttatctctataacagtatgcatgattaacattctttagtttttcttttccttcttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT

Basic information

species Glycine max
transcript GLYMA07G02120.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522662|gb|BU081473.1|BU081473
EST:     TCTTGTTATAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAG                         GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
genomic: TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGgtgatgtttc ... ttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
EST: gi|13312684|gb|BG406335.1|BG406335
EST:     TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAG                         GCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA
genomic: TCTTGTTAGAAGCCATTGGATACATAAGATTCCTTCAGGGTCAAATTGAGgtgatgtttc ... ttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacagtatgcatgattaacattctttagtttttcttttccttcttgggtgcagGCACTCAGTTCTCCTTACTTGGGCAATGGATCAAAAAACATGAGGAATCCACAGTCT
              gattaac  putative branch site (score: 2)
                    cattctttagtttttc  CT-rich tract
                         tttagtttttctttt  TA-rich tract