Sequence
atgc intronic sequence ATGC exonic sequencegtttacgcacttcctagtttttcttggttttctattttttgtccttgcttggttcataaagctaacaaacttttaatcatcttccttgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
Basic information
species | Glycine max |
transcript | GLYMA07G01390.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 3'ss of exon 5
------gtttacgcacttcctagtttttcttggttttctattttttgtcc-ttgcttggttcataaagctaacaaacttttaatcatcttcct---tgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
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gtagataatggggttctactttacattctttgatctctcacttattctttgctactagacataaaaatctgataaccatcctgttttcattctgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACAACAAAAGCCCCCGTTATGAGTTATGCAGCTGAGACATCACTTGGAGTGGTCA
upper sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 17
gtttacgc-acttcctagttt-----ttcttggttttctattttttgtccttgcttggttcataaag--ctaacaaacttttaatcatcttcct---tgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
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gtagatactattttttagcatacgtgctttgatctctctattcttctttgctaatagacacacaaaaatctgattattatctcgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGAGAGCTAATAAGGATCAATGGAACGACAAAAGCTCCTGTTATGAATTATGCAGCTGAGACATCACTTGGAGTGGTCA
upper sequence: GLYMA07G01390.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 3'ss of exon 6
---gtttacgcacttcctagttt---ttcttggttttctattttttgtccttgct----tggttcataaagctaacaaacttttaatcatcttccttgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
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gtagataatg-atttcttactttacattccttggtctctcttcttcttcttcactaatacaaagcaaaagtccgattacattgttttccttttgactaaaagGGGTATTATTTAGCCTCTGCAAGGGAGCTAATAAGGATCAATGGTACAACAAAAGCTCCTGTAATGAATTATGCAGCCGAGTCATCCCTTGGAGTGGTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtccttgcttggttcataaagctaacaaacttttaatcatcttccttgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
tcatcttcctt CT-rich tract
taacaaacttttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttacgcacttcctagtttttcttggttttctattttttgtccttgcttggttcataaagctaacaaacttttaatcatcttccttgaaagGGATATTATCAAGCCTCAGCAAGGGAATTGATAAGGATTAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCAGCTGAGACATCACTTGGATTGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA