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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatattttatgttgggatatgtaactgtagtttttttcttttaaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcagGTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA

Basic information

species Glycine max
transcript GLYMA07G01260.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01260.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G55150.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagatattttatgttgggatatgtaactgtagtttttttcttttaaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagc--aacaa-tttctgtaatcattgt-gcagGTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA
                                                                                                       |||   ||| ||    | | | ||   ||       |||      || |  |   || |  | ||   |||| |  || |  | |||||| || ||||| ||||||||||| |||||||||| |||||| || |||  ||||||  |  |||| ||||  || || ||| | ||
-----------------------------------------------------------------------------------------------------gtaagagagtaagagacatctctctaacgtttctcacagtggtttagttgtcaacaaaaacttatcaggcttctttggtcttaattgcagGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATTGTTGATGTCATTTCCGAAAGCCAAAAGTATAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018178|gb|CX704920.1|CX704920
EST:     CAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAA                         GTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATAT
genomic: CAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcagGTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAA
               tttatttatttaagca  TA-rich tract