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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaagttttgtagaatcctagctcccattcctcagtcaagctgtaatattgtacaaagaaaagggatcagagttcctcttgttttttatgcacaaacataaatggtttgaggtatttccatgctagtcttaacataggcattcttaatagatatttatttttgtgattgcagCATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACTATAATCGAACAGTTTGTCTATTGTATAAATAGTTACAGACAAGTTGCAA

Basic information

species Glycine max
transcript GLYMA07G00820.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316976|gb|FK006147.1|FK006147
EST:     AAGATGAAACTAAAGGTGTATATACTGCCAAGCTTGAGGAACTCAAAAAG                         CATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACT
genomic: AAGATGAAACTAAAGGTGTATATACTGCCAAGCTTGAGGAACTCAAAAAGgtatgaagtt ... gtgattgcagCATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACT
EST: gi|24205508|gb|BU964761.1|BU964761
EST:     AAGATGAAACTAAAGGTGTATATACTGCCAAGCTTGAGGAACTCAAAAAG                         CATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACT
genomic: AAGATGAAACTAAAGGTGTATATACTGCCAAGCTTGAGGAACTCAAAAAGgtatgaagtt ... gtgattgcagCATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACT
EST: gi|192316977|gb|FK006148.1|FK006148
EST:     AAGATGAAACTAAAGGTGTATATACTGCCAAGCTTGAGGAACTCAAAAAG                         CATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACT
genomic: AAGATGAAACTAAAGGTGTATATACTGCCAAGCTTGAGGAACTCAAAAAGgtatgaagtt ... gtgattgcagCATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgctagtcttaacataggcattcttaatagatatttatttttgtgattgcagCATGGTGATCCAATTGATGAGCGTTACAAAGAATTCATGGAGAGGGGTACTATAATCGAACAGTTTGTCTATTGTATAAATAGTTACAGACAAGTTGCAA
                                        tttttgt  CT-rich tract
                      attcttaatagatatt  TA-rich tract