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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagacatatttaattaatcacaatgtgtgtgtgcacatatcttttttgctatgaaaatgatagtcgttcattatgtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT

Basic information

species Glycine max
transcript GLYMA07G00330.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01360.t01 (Vitis vinifera), 3'ss of exon 4
gtgaaagacatattta-attaatcacaatgtgtgtgtgcacatatcttttttgctatgaaaatgatagtcgttcattat-gtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
|| |        |||  ||  |  ||  |   | |    |   || |  || || ||| |  ||| |  | ||||  || ||  ||  ||||| ||||| |||||  |||||||  | |||||||| || || ||||||||||| |||||||  ||||| || || |||||||||||||| ||||||||||
gtaagttttgattttgtatggaaaacttttctttttcctatgaatatgcttcgc-atgca--tgaaacacattcaaaattgtttattgcagGAGGATCTCTACTACTCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACTGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01410.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaagacatatttaattaatcacaatgtgtgtgtgc-acatatcttttttgctatgaaaatgatagtcgttca---ttatgtca-atcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
|| |        |||   |    ||||| | | | | | |   || |  |  || ||| |    | |  | || |   || | | | ||  ||||| ||||| ||||| ||||||||  | |||||||| ||||| ||||||||||| |||||||  || || || || |||||||||||||| ||||| ||||
gtaagttttgattttttatggaaacaatttctttttcctatgaatatgctacgc-atgcatgaaacacacatttaaaattgtttaatattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAAAAAGT

upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01220.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaag-acatatttaattaatcacaatgtgtgtgtgc-acatatcttttttgctatgaaaatgatagtcgttcattat-gtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
||||    |  | | |||   |  |   |  || | | |     || |    | | ||| |    | | || ||||  || ||  ||  ||||| ||||| ||||| ||||||||  | |||||||| || || |||||| |||| |||||||  || || || || |||||||||||||| ||||||||||
gtgagtttagctttctaacagaaaagctttcgtatttcctgtgaatataacgtac-atgcatgaaacactcattcaaaattgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATGGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01280.t01 (Vitis vinifera), 3'ss of exon 2
gtgaaagacatatttaattaatcacaatgtgtgtgtgcacatatcttttttgctatgaaaatgatagtcgttcattat-gtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
|| |        |||   |    ||||| | | | | |  ||   | |  | |   |   |||| |  | ||||  || ||  ||  ||||| ||||| ||||| ||||||||  | |||||||| ||||| |||||||||||  ||||||  || || ||  | |||||||||||||| ||||||||||
gtaagttttgattttttatggaaacaatttct-ttttcgtatgaatatgctac-gcgtgcatgaaacacattcaaaattgtttatttcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTAATGTGGGATAGTTTGAACATATGTACCGAGCCTTTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01390.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaagacat-atttaattaatcacaatgtgtgtgtgcacatatcttttttgc-tatgaaaatgatagtcgttcat-tatgtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
  | |||   | ||||  |     ||| | |   | | |  ||   | |  | |  ||| |    | |  | ||||  |||||  ||   |||| ||||| ||||| ||||||||  | |||||||| || || ||||||||||| |||||||  || || || || |||||||||||||| ||||||||||
--gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgtagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01480.t01 (Vitis vinifera), 3'ss of exon 7
gtgaaagacat-atttaattaatcacaatgtgtgtgtgcacatatcttttttgc-tatgaaaatgatagtcgttcat-tatgtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
  | |||   | ||||  |     ||| | |   | | |  ||   | |  | |  ||| |    | |  | ||||  |||||  ||  ||||| ||||| ||||| ||||||||  | |||||||| || || ||||||||||| |||||||  || || || || |||||||||||||| ||||||||||
--gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacacattcaaatatgtttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01520.t01 (Vitis vinifera), 3'ss of exon 10
gtgaaagacatattta-attaatcacaatgtgtgtgtgcacatatcttttttgctatgaaaatgatagtcgttcattatgtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
||||        |||  ||  |  ||  |   | |    |   || |  ||  | ||| |  ||| |  | ||||  ||    ||  ||||| ||||| ||||| ||||||||  | |||||||| || || ||||||||||| |||||||  ||||| || || |||||||||||||| || |||||||
gtgagttttgattttgtatggaaaacttttctttttcctatgaatatgcttcac-atgca--tgaaacacattcagaattgttattgcagGAGGATCTCTACTACCCCCATCCCCTAATACAAGATCTGATGTGGGATAGTTTGTACATATGTACTGAGCCTCTTCTTACTCGTTGGCCCTTTAACAAGT

upper sequence: GLYMA07G00330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv09s0054g01230.t01 (Vitis vinifera), 3'ss of exon 6
gtgaaagacat-atttaattaatcacaatgtgtgtgtgcacatatcttttttgc-tatgaaaatgatagtcgttcattat-gtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
  | |||   | ||||  |     ||| | |   | | |  ||   | |  | |  ||| |    | |  | ||||  || ||  ||  ||||| ||||| ||||| ||||| ||  | ||||||||  | || ||||||||||| |||||||  || || || || |||||||||||||| ||||||||||
--gtaagttttgattttgtatggaacacttttccttttccgatgaatatgctacgcatgcatgaaacacactttcaaaattgtttattgcagGAGGATCTCTACTACCCCCACCCCCTAATACAAGATATGATGTGGGATAGTTTGTACATATGTACCGAGCCTCTTCTTACTCGTTGGCCCTTCAACAAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669059|gb|BE190161.1|BE190161
EST:     TTAATTGGAAGAAAGCGCGTCACCAATGTGCAAAG                         GAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGT
genomic: TTAATTGGAAGAAAGCGCGTCACCAATGTGCAAAGgtgaaagaca ... tcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcacatatcttttttgctatgaaaatgatagtcgttcattatgtcaatcacagGAAGATCTTTACTATCCCCATCCTTTGATACAAGACCTAATATGGGATAGTTTATACATATTCACTGAACCGCTACTTACTCGTTGGCCTTTCAACAAGT
      atatctttttt  TA-rich tract