1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttctttatccaaatccccataatttcagcagcgtaaatattttttaatcataattaattattatattagtcttagtttttcaactttgtaatatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAG
species | Glycine max |
transcript | GLYMA06G45160.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATTGCATTTACAACATGGTTGG GTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGAEST: gi|13181293|gb|BG352633.1|BG352633
genomic: ACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
EST: ACCA-TACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGAEST: gi|298178903|gb|HO024638.1|HO024638
genomic: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
EST: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTEST: gi|21887940|gb|BQ741153.1|BQ741153
genomic: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACT
EST: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
genomic: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
aatcataattaattattatattagtcttagtttttcaactttgtaatatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAG
aattaat putative branch site (score: 3)
taattaattattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctttatccaaatccccataatttcagcagcgtaaatattttttaatcataattaattattatattagtcttagtttttcaactttgtaatatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - atccaaa
- - - - - - - ccccata