1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtagtgagaccatctatatttgtgatttcacatttgtcagtgtgtttttttctgtgtattttacaaatttgtatcagatttgacatcttaccttatcatgtcatttatttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCCATTACACCAAACGGGCCTGAAGTCTTCCTGCTTGATTACCCTAGTCATC
species | Glycine max |
transcript | GLYMA06G43840.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATGCAAG AGTAGCTTGGCCATTGCTATAAGATATGCATTGACAATGCATGCATTCTCCEST: gi|33390491|gb|CA853686.1|CA853686
genomic: TGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATCCAAGgtagtgagac ... ttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCC
EST: TGACTTCTGGTCGTGTTACCATTGCTGTTAGTGCTGTTTACATCTCCAAG ATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCGAGCATTCTCCEST: gi|12774606|gb|BG239533.1|BG239533
genomic: TGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATCCAAGgtagtgagac ... ttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCC
EST: TGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATCCAAG ATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCCEST: gi|7691519|gb|AW759645.1|AW759645
genomic: TGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATCCAAGgtagtgagac ... ttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCC
EST: TGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATCCAAG ATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCC
genomic: TGACTTCTGGTCGTGTTACTATTGCTGTTAGTGCTGTTTACATATCCAAGgtagtgagac ... ttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCC
caaatttgtatcagatttgacatcttaccttatcatgtcatttatttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCCATTACACCAAACGGGCCTGAAGTCTTCCTGCTTGATTACCCTAGTCATC
atcttac putative branch site (score: 3)
tttgctctt putative PPT
tcatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgagaccatctatatttgtgatttcacatttgtcagtgtgtttttttctgtgtattttacaaatttgtatcagatttgacatcttaccttatcatgtcatttatttgctcttagATTAGCTTGGCCATTGCTATAAGATATGCATTGACAAGGCAAGCATTCTCCATTACACCAAACGGGCCTGAAGTCTTCCTGCTTGATTACCCTAGTCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG