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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaatatacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCCGGAA

Basic information

species Glycine max
transcript GLYMA06G41510.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G41510.1 (Glycine max), 3'ss of exon 6
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 3'ss of exon 5
gtatgatgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaatatacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttt-taggatgcttcttattctgtagttaatgttgaatcaagcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTA---TTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCCGGAA
                                                                               | |  |  | ||| ||    |||  ||     | |||||         | | |||| ||   ||  |     || | |    ||||||||||| ||||| || || |||||||| ||||| || |||||||||||||   |  | || || |||||||| || || ||||| || || ||  |     
------------------------------------------------------------------------------gtaaacatatcttctttctctttgaaatctcagtctattgaaccacctcaagtttctaat--ggtgatcttctttaactt---cagGTTGCTGACTTTGGCCTCTCCAGAGAAGAAATGGTAGACAAACATGCAGCTAACATCAGAGGAACATTTGGCTACCTCGATCCCGAATACATTTCAACAA---

upper sequence: GLYMA06G41510.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 3'ss of exon 5
gtatgatgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaatatacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATT---CGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCCGGAA
                                                  ||||| |   | |   ||    |   ||| ||  |  | || ||| ||||| |     || | |   ||   |||| | |||   ||  ||| |   ||||| ||   | ||||||||||||||||| ||||| || |||||||||||    ||||||||| ||| |   || || || ||||| |||||||| || |||||| ||||  |     
--------------------------------------------------aaataaaattatctg-atgtggactgaaaatag-aggtcttaatt-gtgttttt----tcgtattaagcacctaggct-cttacaatcttgttg--gatgtttaa---aacagGTTGCTGATTTTGGGCTTTCGAGGGAAGAGATGGTTAGCAAACATGCATCTAATATACGAGGAACTTTTGGATATCTTGATCCTGAGTATGTATCAACAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014430|gb|CX701172.1|CX701172
EST:     GAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGG                         GTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCT
genomic: GAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGgtatgatgat ... aatcaagcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGGGGTACCTTTGGCTATCTTGACCCCGAGTATATATCTTCCGGAA
                                  agttaat  putative branch site (score: 4)
                      ttcttatt  TA-rich tract