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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgactaataattttcgtattgtttctatttttgtcttcaattcatgttgtggtttggactaaaatttggtaaaacttagttttacattacacactaaatattgtgaaaacactcatactgctagatctaataaattttgtgattctgttagGTGTGGACATTGCAAAAGTCTTGCTCCTATAA

Basic information

species Glycine max
transcript GLYMA06G24520.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193731335|gb|FK664867.1|FK664867
EST:     GTTGTCTTAGATGAAACCAAAGATGTCTTGGTTGAGTTTTATGCACCCTG                         GTGTGGACATTGCAAAA
genomic: GTTGTCTTAGATGAAACCAAAGATGTCTTGGTTGAGTTTTATGCACCCTGgtactgacta ... attctgttagGTGTGGACATTGCAAAA
EST: gi|193515760|gb|FK474330.1|FK474330
EST:     GTTGTCTTAGATGAAACCAAAGATGTCTTGGTTGAGTTTTATGCACCCTG                         GTGTGGACATTGCAAAA
genomic: GTTGTCTTAGATGAAACCAAAGATGTCTTGGTTGAGTTTTATGCACCCTGgtactgacta ... attctgttagGTGTGGACATTGCAAAA
EST: gi|207754217|gb|GD724753.1|GD724753
EST:     TTGTCTTAGATGAAACCAAAGATGTCTTGGTTGAGTTTTATTGCACCCTG                         GTGTGGACATTGCAAAAGT
genomic: TTGTCTTAGATGAAACCAAAGATGTCTTGGTTGAGTTTTAT-GCACCCTGgtactgacta ... attctgttagGTGTGGACATTGCAAAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattgtgaaaacactcatactgctagatctaataaattttgtgattctgttagGTGTGGACATTGCAAAAGTCTTGCTCCTATAA
                                              ttctgtt  CT-rich tract
                         tagatctaataaattt  TA-rich tract