ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAAT

Basic information

species	Glycine max
transcript	GLYMA06G20360.2
intron #	6
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 6
lower sequence: AT5G61730.1 (Arabidopsis thaliana), 3'ss of exon 6

gtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAAT
                                                                                                 |||     | ||   ||     |    ||  |   || | ||  |   |  |   | ||| | |     | | |||   ||| ||| || | || || | |||||| | ||  || |||||| ||||||||||  ||||  | ||||||||||| || ||||| |||||||| |||||||| ||||
------------------------------------------------------------------------------------------------gtatgccaacctt---tctgagatagattttggatctaatagttgtgtaggtatcattctctgaacaaactgtgttt---ttggcagAATAAAATCTACATATGGCTCGTGGGAACGTTCTTTTTCTGGTTTGTATTGGCTCTCTACTTTGACAACATCATCCCCAATGCATCCGGTGTGAGAAAAT

upper sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 6
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 3'ss of exon 6

gtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAAT
                                                                                                 ||  |   || | | |      | |   | |    ||  | |||      || ||| ||| |    ||  || ||    ||| ||| |||| || ||    ||||||   |  ||||||||| | ||||||||| ||||  ||||||||||||||||||  |||||||| || || || || ||||
------------------------------------------------------------------------------------------------gtaagtcaactctcaataaaatttccatctaa----taactctgtc----taatagttctctgatcattactttttggttttggcagAATGATATCTACTTGTGGCTTCTTGGGACTTTCTTTTTGTGGTTTGTTTTGGCTCTTTACTTTGACAATATAACTCCAAATGCTTCTGGAGTAAGAAAAT

upper sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 6
lower sequence: AT5G61690.1 (Arabidopsis thaliana), 3'ss of exon 4

gtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAAT
                                              || | |||  | |     |   |||        || ||||| ||   |    | |||     | | |  | |          | || | | |  || ||  ||||      ||||||||   |       |||  || |    || ||  | |||||    |  || ||| |  |||||||||||||||| || |||||||||||||| || || || || || ||||| || ||| 
--------------------------------------------gtatgtgaagggggcca--agcgacttgcg-----taatttctattgtatgcagacattcaaaataaattttactagttacgttgtct-aatagcatt-ctctaaca------agtattttaaatt------ttggtagAACATTATCTACCAGTGGCTCCTTGGGACATTCCTATTCTGGTTTGTTCTGGCTATCTACTTTGACAATATTATTCCCAACGCCTCCGGTGTAAGAAAAC

upper sequence: GLYMA06G20360.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 3'ss of exon 6

gtatgcaatcatttgacctctaaatccctacttcatacaccacttcattttaagaagccttttggttgcttttaccttttactttctgttccttagttatatttgctttgattcctcccttcccttcagccttagttgtgttactgcaacagtactcagtattttgtttcttttcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTGGCCATTTACTTTGACAATATAATCCCAAATGCATCAGGTGTGAGGAAAT
                                                                             ||   |   | ||||||  | |  |||  ||| | || |         | |   | || | | |   |   |   | |||    |    | |  | |  ||||||| |||| || |||| ||||||  | || || || ||||| |||||| || ||||||| ||||| || ||||||||||||||| |||| |||||||||||||
-----------------------------------------------------------------------------ttctttcattattccttcttcacttttatttttaatcatgaaaggtaatta--ttaaggtttatcctttatattatgctc----tcacttcttatattcttgacagAATGATATCTATATATGGCTCACAGCCACATTTTTTCTATGGTTTCTTTTGGCCATCTACTTCGATAATATAATCCCAAATTCATCGGGTGTGAGGAAAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|207698720|gb|GD679657.1|GD679657

EST:     GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATT                         GATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG
genomic: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTgtatgcaatc ... tcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG

EST: gi|208073325|gb|GD869944.1|GD869944

EST:     CGGGGAGAATGTGCTCTTAATGATTCTAGTACTTGTTGTTGATAACTATT                         GATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG
genomic: CGGGGAGAATGTGCTCTTAATGATTC-AG-ACT-GT-GT-GATAACTATTgtatgcaatc ... tcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG

EST: gi|193419199|gb|FK384851.1|FK384851

EST:     TCAGACTGTGTGATAACTATT                         GATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG
genomic: TCAGACTGTGTGATAACTATTgtatgcaatc ... tcattgacagGATGACATTTATAAATGGCTTGCGGCTACTTTCTTTCTCTGGTTTGTTCTG

EST: gi|208307383|gb|GE108839.1|GE108839

EST:     GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATT                         A
genomic: GTAAACGGGGAGAATGTGCTCTTAATGATTCAGACTGTGTGATAACTATTgtatgcaatc ... tcattgacag-