1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcctctcatgttacttgcctttaccattttatgttcatgtcctgcatgcttctttacctgtcattccaatctttttcgattttctgttttcacttcacagGATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACTGACTGGAGGAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTT
species | Glycine max |
transcript | GLYMA06G20170.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGATGCTGATGTA-TGNAATGACATCATGCGTGAAGTTGACACTGACAAG GATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACTEST: gi|19935345|gb|BQ080375.1|BQ080375
genomic: TGATGCTGATGTATTG-AATGACATCATGCGTGAAGTTGACACTGACAAGgtttgacttt ... cacttcacagGATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACT
EST: CTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAG GATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACTEST: gi|151396725|gb|EV266598.1|EV266598
genomic: CTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGgtttgacttt ... cacttcacagGATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACT
EST: CTGATGCTGATGTATTGAGTGGCATCATGCGTGAAGTTGACACTGACAAG GATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACTEST: gi|14258897|gb|BG881805.1|BG881805
genomic: CTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGgtttgacttt ... cacttcacagGATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACT
EST: CTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAG GATGGTCGCATEST: gi|208204849|gb|GE005750.1|GE005750
genomic: CTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGgtttgacttt ... cacttcacagGATGGTCGCAT
EST: CTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAG GATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACT
genomic: CTGATGCTGATGTATTGAATGACATCATGCGTGAAGTTGACACTGACAAGgtttgacttt ... cacttcacagGATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACT
atgcttctttacctgtcattccaatctttttcgattttctgttttcacttcacagGATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACTGACTGGAGGAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTT
tctttttcgattttct CT-rich tract
aatcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctctcatgttacttgcctttaccattttatgttcatgtcctgcatgcttctttacctgtcattccaatctttttcgattttctgttttcacttcacagGATGGTCGCATCAGTTATGAGGAGTTTGTGGCGATGATGAAAACTGGAACTGACTGGAGGAAAGCATCTAGGCAATATTCAAGGGAGAGATTCAAGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
-cctctca
- - - - - -tacttgc
- - - - - - - - - - - - - - - - - -catgtcc
- - - - - - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcca