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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttttagatgacttttctttatccttagtaattcctaaagttggttttgtatttgttggcaagattcatatttttttatatggttttgcatcttgttataacgctacttcataacttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGTTTTAAAAACTATGATATTGGGAAACTACCCTGAATTGAGAATTTTTGTC

Basic information

species Glycine max
transcript GLYMA06G17930.4
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400262|gb|EV270076.1|EV270076
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|193488323|gb|FK456146.1|FK456146
EST:     CATCAATGAATATGCCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|193389661|gb|FK357220.1|FK357220
EST:     TGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGTCAAG
genomic: TGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTG-CAAG
EST: gi|193590969|gb|FK545514.1|FK545514
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|209721178|gb|BW659190.1|BW659190
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|208209366|gb|GE005162.1|GE005162
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|10234447|gb|BE803335.1|BE803335
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|8403148|gb|BE058782.1|BE058782
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
EST: gi|214004813|gb|DB988822.1|DB988822
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagtattt ... cttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttttatatggttttgcatcttgttataacgctacttcataacttgttacagAAACTACAATTGTGGGACTTGGAGATCATGGCAACGGGAGGAATTGCAAGTTTTAAAAACTATGATATTGGGAAACTACCCTGAATTGAGAATTTTTGTC
                                       tcataac  putative branch site (score: 2)
                       ttgttataa  TA-rich tract