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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaacataaatagccaaataaataaataaattatttttaagaaagaaaaaaaaaagaaggcttttctacctttctttactacttattattattatttattgacaaaaacatcattttcagGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAATATAAAA

Basic information

species Glycine max
transcript GLYMA06G17420.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283681|gb|AW596285.1|AW596285
EST:     CAGTCTCATTTTTTCTTCAAGGGCAGAGGCCAAATGTGTTATCTGAGGAG                         GATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTT
genomic: CAGTCTCATTTTTTCTTCAAGGGCAGAGGCCAAATGTGTTATCTGAGGAGgtataaacat ... tcattttcagGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacctttctttactacttattattattatttattgacaaaaacatcattttcagGATACCGGTAGTCATTTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAATATAAAA
                               tattgac  putative branch site (score: 2)
                                             tcattttc  putative PPT
     tttctttactacttat  TA-rich tract