1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggggaatataattgttttccaatactagttagttattatatgccctttgaatgccaatactaaaaccaaagtcatgacattgggtttatacttttaacagAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAG
species | Glycine max |
transcript | GLYMA06G16740.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTG AGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAAT
genomic: GTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGgtaggtacac ... cttttaacagAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAAT
tttgaatgccaatactaaaaccaaagtcatgacattgggtttatacttttaacagAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAG
tactaaa putative branch site (score: 1)
tactttt putative PPT
tttatacttttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggaatataattgttttccaatactagttagttattatatgccctttgaatgccaatactaaaaccaaagtcatgacattgggtttatacttttaacagAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - gaatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgac