1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaggttctcttttggttgattcattaccaagtacactgtttatataggttacatcatgctcgttcaggaatgtatatggagagatattgaatgaaaatcagaactttgtcatttgacttctgcatgttaaaattcttgaaccattatttgcatttcttctaattcaatagtgtatgttgttgctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGGAAAGGGCTACTCGACCGAATGAAAGAATTTCTTTGAACAGAATTGGATA
species | Glycine max |
transcript | GLYMA06G15360.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTCCATTCGAGAAGGCATTG AAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGGEST: gi|208163206|gb|GD965716.1|GD965716
genomic: TTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGG
EST: ATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG AAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGGEST: gi|192295732|gb|FG990826.1|FG990826
genomic: ATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGG
EST: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG AAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCCGGTGEST: gi|209704424|gb|BW678394.1|BW678394
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCC-GGTG
EST: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTG AAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGGEST: gi|193343895|gb|FK310339.1|FK310339
genomic: TAATTCCAAAGATATTATAAGACCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGG
EST: CCAAATCTTTCCATTCGAGAAGGCATTG AAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGG
genomic: CCAAATCTTTCCATTCGAGAAGGCATTGgtaggttctc ... gctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGG
tgaaccattatttgcatttcttctaattcaatagtgtatgttgttgctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGGAAAGGGCTACTCGACCGAATGAAAGAATTTCTTTGAACAGAATTGGATA
taattcaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttctcttttggttgattcattaccaagtacactgtttatataggttacatcatgctcgttcaggaatgtatatggagagatattgaatgaaaatcagaactttgtcatttgacttctgcatgttaaaattcttgaaccattatttgcatttcttctaattcaatagtgtatgttgttgctgatacagAAATCATTGTTTCCGGGGGGATGACTATGCCACAGTTGATATCTCCGGTGGAAAGGGCTACTCGACCGAATGAAAGAATTTCTTTGAACAGAATTGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA