Sequence
atgc intronic sequence ATGC exonic sequencegtatgattggctgagcttaatggtggtggtaacaatgtactttgactgtcatcaaggagttgttttagcattttttattcttatcactgtattggtgttattttttgtagGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTCTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCA
Basic information
species | Glycine max |
transcript | GLYMA06G15350.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------------------------gtatgattggctgagcttaatggtggtggtaacaatgtactttgactgtcatcaaggagttgttttagcattttttattcttatcactgtattggtgttattttttgtagGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTCTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCA
| ||| | || | | | || |||| | | | | | | | | || || | || || || | | | || || ||||||| |||| |||||| | ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||| ||||||| || |
gtatggctggattggctcagatcattgtcatatgaccttgatttgtgaaattctctgttattttagtttttaaatatcttcacttgttctattgtatctgctttcttcaccatgtgc--aggtgttgaactacaaataaccataatatctgttgttgttgtttttttttt----tttttttttgcagGAGGAGCATAGGGCTCGAGATCTATTTTATGCTCTTTGGGTACCTGATCTCTTTATGGAAAGAGTTCAGAGTAATGGGCATTGGTCCCTGTTTTGCCCTA
upper sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 6
lower sequence: EFJ14283 (Selaginella moellendorffii), 3'ss of exon 6
gtatgattggctgagcttaatggtggtggtaacaatgtactttgactgtcatcaaggagttgttttagcattttttattcttatcactgtattggtgttattttttgtagGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTCTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCA
| ||| || | | | | | || | || || |||| ||| | ||||| || ||| |||| |||| |||||| | |||||||| || |||||| ||||| ||||||| || | ||||||||||||||||| |
--------------------------------------------------------gtagtgtctttttgtcctgcaat-tcatttttagtttcttgcatcaacgcacagGAGGAGAACCGTGCCCGTGATTTGTTCTATGGCCTCTGGATTCCTGATCTTTTCATGGAACGAGTTAGGAGCAATAGCGATTGGTCTTTGTTTTGTCCGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggagttgttttagcattttttattcttatcactgtattggtgttattttttgtagGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTCTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCA
ttatttttt CT-rich tract
ttttagcattttttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgattggctgagcttaatggtggtggtaacaatgtactttgactgtcatcaaggagttgttttagcattttttattcttatcactgtattggtgttattttttgtagGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTCTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA