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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatccctataatcgatcaactgcgtgttgcttattcttttctttggttattttagttaaaatcttcttgttattaatttgaatctgttcaacatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG

Basic information

species Glycine max
transcript GLYMA06G13240.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13240.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv13s0074g00190.t01 (Vitis vinifera), 3'ss of exon 6
gtacatatccctataatcgatcaactgcgtgttgcttattcttttctttggttattttagttaaaatcttcttgttattaatttgaatc-tgttcaacattt-ccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG
||| | ||     ||| |   | | | ||   |||||| ||  |  |||  |   |  | ||  |   | |||||| ||   ||   |  ||  |||  ||| |||||||||| || |||||||||||||||||||| |||||| | ||||||   ||||| ||||| |||||| ||||||| || ||||| || |||||
gtataaatgaaactaagcttcccaatacgc-ctgcttaatcaatgattttatagatacattttgataatacttgtttttgtcttacttgatgagcaatgttttccagGTTTCCATTTTTTGGAAAGAAATACCAGCTGAAATTTTCCAATGATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669741|gb|BE190848.1|BE190848
EST:     TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAA                         GTTTCCTTTATTTGGAAAGAAATACCAGCTTAAATTTGCTAATGATGTCTC
genomic: TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatcc ... acatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC
EST: gi|151396980|gb|EV266853.1|EV266853
EST:     TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAA                         GTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC
genomic: TGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAgtacatatcc ... acatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattttagttaaaatcttcttgttattaatttgaatctgttcaacatttccagGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG
                         tattaat  putative branch site (score: 2)
                                              catttcc  putative PPT
     tttagttaaaatcttc  TA-rich tract