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gtaagtaaggccatatttcaatcattaatatagctatttcattattcagaaaaaaatactgttatggttatttgtagGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATG
species | Glycine max |
transcript | GLYMA06G13210.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGAT GTTTCTAGGAAGTTTTTTCCACAGTTGGCTGTTGGGTTTGAAGATTCTCGAEST: gi|17963401|gb|BM270150.1|BM270150
genomic: GCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATgtaagtaagg ... ttatttgtagGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGA
EST: GCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGAT GTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAEST: gi|208218386|gb|GE020436.1|GE020436
genomic: GCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATgtaagtaagg ... ttatttgtagGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGA
EST: GCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGAT GTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAEST: gi|208104637|gb|GD905020.1|GD905020
genomic: GCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATgtaagtaagg ... ttatttgtagGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGA
EST: AAGATGGTTATTGAT GTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGA
genomic: AAGATGGTTATTGATgtaagtaagg ... ttatttgtagGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGA
cattaatatagctatttcattattcagaaaaaaatactgttatggttatttgtagGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATG
cattaat putative branch site (score: 3)
tatttcattattcaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaggccatatttcaatcattaatatagctatttcattattcagaaaaaaatactgttatggttatttgtagGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA