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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggaactttccctatgtgtaattagagttctgaatctatgtctttgtttatttattgtttgatatctccaatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTGGAATCAGAAGATTTGTCTCGGATTGTGACTTCCAACCACTTTGCTCGAT

Basic information

species Glycine max
transcript GLYMA06G12010.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254319120|gb|GR828848.1|GR828848
EST:     GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTG                         GTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
genomic: GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaact ... caatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
EST: gi|23725278|gb|BU760599.1|BU760599
EST:     GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTG                         GTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
genomic: GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaact ... caatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
EST: gi|254324505|gb|GR833930.1|GR833930
EST:     GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTG                         GTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG
genomic: GCATTTCTCCAGATTATGTTATAACAACAAAAGATTGTGCTCCCAAGTTGgtatggaact ... caatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagttctgaatctatgtctttgtttatttattgtttgatatctccaatttctagGTGGATGCCCTAAAGACTGAATTGGAGAAATGTTATGGAAAGAACCCGTTGGAATCAGAAGATTTGTCTCGGATTGTGACTTCCAACCACTTTGCTCGAT
                                 gtttgat  putative branch site (score: 5)
                                       tatctcc  CT-rich tract
                   tttgtttatttattgt  TA-rich tract