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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctgaaaattggattttgtgctctacatttatcttcttattttttctgtgatttcattgtcttttttagttaatggcgcattggctatatttggatattgttatagtttcattggggttttcattctactgcagGCAGTGGCAGGCGGTCTCTTATTGAAACTTCCTTTCAACACCATATTTGAGTATCTCCAG

Basic information

species Glycine max
transcript GLYMA06G11270.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405351|gb|EV275165.1|EV275165
EST:     GCGAGGCTTATTCTGAAGCAGTGAAGAGGGCTATCGTGGATCATCATACT                         GCAGTGGCAGGCGGTCTCTTATTGAAACTTCCTTTCAACACCATATTTGAG
genomic: GCGAGGCTTATTCTGAAGCAGTGAAGAGGGCTATCGTGGATCATCATACTgtatgatctg ... tctactgcagGCAGTGGCAGGCGGTCTCTTATTGAAACTTCCTTTCAACACCATATTTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attggctatatttggatattgttatagtttcattggggttttcattctactgcagGCAGTGGCAGGCGGTCTCTTATTGAAACTTCCTTTCAACACCATATTTGAGTATCTCCAG
                                      ttttcattct  CT-rich tract
               atattgttatagttt  TA-rich tract