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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtaaattattgtatcaagctgtgaagtgtctgttacttattgtatcatgatcaatttcatattcatcaagtttatttaatgttatttttccctctgttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATG

Basic information

species Glycine max
transcript GLYMA06G08670.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606173|gb|AI900271.1|AI900271
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|27808994|gb|CB063416.1|CB063416
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCCTCTGGATCTATTGGTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|17022063|gb|BM093097.1|BM093097
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|37997401|gb|CF808990.1|CF808990
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGGTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|151408997|gb|EV278805.1|EV278805
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|213587077|gb|DB961772.1|DB961772
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|151394218|gb|EV264089.1|EV264089
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|6454608|gb|AW185291.1|AW185291
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTTCTG-AAGAACCTTGGT-CTGCTCCATCTGGATCTATTGTTT-GCT
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTT-CTGGAAGA-CCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCT
EST: gi|9986765|gb|BE660873.1|BE660873
EST:     CAAAACATACCGCTACTATGCTC-AGCAACACGAGGACTTGACTTTCAAG                         GACTT-TGGAAGACCTTGG
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGG
EST: gi|151395018|gb|EV264889.1|EV264889
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTT-GCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|213588877|gb|DB967957.1|DB967957
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|16996361|gb|BM085733.1|BM085733
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|24135997|gb|BU926507.1|BU926507
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|7686676|gb|AW757333.1|AW757333
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|24205360|gb|BU964613.1|BU964613
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|254323227|gb|GR840032.1|GR840032
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|151411675|gb|EV281486.1|EV281486
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|209714938|gb|BW650784.1|BW650784
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTAC
EST: gi|18690845|gb|BM519693.1|BM519693
EST:     CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAG                         GACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGC
genomic: CAAAACATACCGCTACTATGCTCCAGCAACACGAGGACTTGACTTTCAAGgttgtaaatt ... ttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatttcatattcatcaagtttatttaatgttatttttccctctgttccttacagGACTTCTGGAAGACCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCCACTGGTGTGGATCCAACCCTTGAGCAATG
                      atttaat  putative branch site (score: 4)
                            tgttatttttccctct  CT-rich tract
       atattcatcaagttta  TA-rich tract