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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaatgccaagtcacactctcaagatcatattttgcattatgagttgtttatagtactgtagtgttgtattttataattaatgtattatgtatctgtgatttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAATTGCAGACCGTGACACACTCGGTTCCCATTTCATTATCACTTTGAAAGC

Basic information

species Glycine max
transcript GLYMA06G07380.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07380.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv04s0008g05090.t01 (Vitis vinifera), 3'ss of exon 6
gttagaatgccaagtcacactctcaagatcatattttgcattatgagttgtttatagtactgtagtgttgtattttataattaatgtattatgtatctgtgatttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAATTGCAGACCGTGACACACTCGGTTCCCATTTCATTATCACTTTGAAAGC
            ||  | |  || | |||       |   ||| |  | | || |       |  || ||  ||| ||||   |   | |     ||   |  |||||| |||||||||||| ||||||||||||||||   |||||||| | || ||| || |||| || || |||||  | ||||| || || ||| |||| || |  ||
----------ataggtaaatgctaaggat-gggccatat-ttagggatggcttgttaccaaattatgatgattttcataaaatactaagtgcaagtcatggcattgtttcagATGAGTCACCCAGGCTAAAGCATGATGGACCTGGCCTTCTGTCTATGTCAGTTGCCGATCGGGACACTGTTGGTTCTCAATTTATTGTCACCTTCAGTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397907|gb|EV267780.1|EV267780
EST:     GGACTGCTGGAGAAAGCATATATGGTTCAAAGTTCCCAG                         ATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAA
genomic: GGACTGCTGGAGAAAGCATATATGGTTCAAAGTTCCCAGgttagaatgc ... tttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAA
EST: gi|51338391|gb|CO982257.1|CO982257
EST:     GGACTGCTGGAGAAAGCATATATGGTTCAAAGTTCCCAG                         ATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAA
genomic: GGACTGCTGGAGAAAGCATATATGGTTCAAAGTTCCCAGgttagaatgc ... tttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactgtagtgttgtattttataattaatgtattatgtatctgtgatttgttttagATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAATTGCAGACCGTGACACACTCGGTTCCCATTTCATTATCACTTTGAAAGC
                     aattaat  putative branch site (score: 3)
                                             tttgtttt  putative PPT
             tattttataattaatg  TA-rich tract