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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataggcattgcactctaattttcagggttaatcctcatgatagttgtttgagttagtgattacaatcatggcatgttctgtgcctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTT

Basic information

species Glycine max
transcript GLYMA06G06360.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G06360.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os03g51540.1 (Oryza sativa), 3'ss of exon 6
gtataggcattgcactctaattttcagggttaatcctcatgatagttgtttgagttagtgatt--------acaatcat-------ggcatgttctgtgcctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTT
   |   | ||     || |||  |||| ||| | || ||  | ||  ||  | || |   ||        ||| |  |       ||| ||         ||||| |  | || |||  ||| | | |||||||  ||||||| ||||  |||||||||||| | |||||||||||||| |||||| || | ||| | || ||| 
--gtgccctttattacctgatt--caggattatttcttatccttgtaattaaattttgcattttgctgtacacatttgtttctgagggcttgccaatccattttagGTAATAGACATTCCATCCGGTCCAGGACCACATGAGATCCAGTATGATGAAGAATGGCTTGCAATAACACGGAAATTCAACAATGTTTTCTCCTTAACTC

upper sequence: GLYMA06G06360.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv18s0001g08180.t01 (Vitis vinifera), 3'ss of exon 6
----gtataggcattgcactctaattttcagggttaatcctcatgatagttgtttgagtt--agtgattacaatcatggcatgttctgtgcctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTT
       | |  |||    | ||  ||| | ||    |     |  |  ||| | ||  |  | ||  |  | |  ||| |      | |  |||||||||| ||||| ||| |||   |||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||  ||| || ||||| ||  
gtagcccttgttattttcatttatgttttaagggcttttaatgtagtcattgctggaaattaaatgcctcaattggtggtactgagcgagt-tttagATTGTTGAAATAGAAACAGTGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgatagttgtttgagttagtgattacaatcatggcatgttctgtgcctttagATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTT
                                              tgccttt  CT-rich tract
                        attacaat  TA-rich tract