1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctcttctctctctcttttgtcttatttcctttgagggataaaagaagtgtacaagttactgtgttgaacttgaattctagctgacttttcctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATGAGAGCTGGCAGATGAAGCAATTAGGTAATTATCCAGATGCAGAGTGAGAGTACTGTTATTGAT
species | Glycine max |
transcript | GLYMA06G05560.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAAATGGAG CACTACACTCCTTCGCACGAAEST: gi|213592624|gb|DB979415.1|DB979415
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAGATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAA
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAGATGGAG CACTACACTCCTTCGCACGAACATGTTGCCCCTCATGAGAGCTGGCAGATGEST: gi|254346954|gb|GR856676.1|GR856676
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAGATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATGAGAGCTGGCAGATG
EST: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAGATGGAG CACTACACTCCTTCGCACGAACATGTTGCCCCTCATGAGAGCTGGCAGATG
genomic: ATATAGTTGTCTCTGCTACGTCAGCCAAAGAACTTATGATGAAGATGGAGgtctaatttc ... ctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATGAGAGCTGGCAGATG
agtgtacaagttactgtgttgaacttgaattctagctgacttttcctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATGAGAGCTGGCAGATGAAGCAATTAGGTAATTATCCAGATGCAGAGTGAGAGTACTGTTATTGAT
agctgac putative branch site (score: 3)
ctgacttttccttttt CT-rich tract
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttctctctctcttttgtcttatttcctttgagggataaaagaagtgtacaagttactgtgttgaacttgaattctagctgacttttcctttttgcagCACTACACTCCTTCGCACGAACATGTTGCCCCTCATGAGAGCTGGCAGATGAAGCAATTAGGTAATTATCCAGATGCAGAGTGAGAGTACTGTTATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - -ctctctc
- - - - - - - - - - - - - tcctttg
- - - - - - - - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - gttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctagctg