1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtcaacttgagcagtcctatccattttgttggtggcatctatgctttctttttggttccataaaggttctattttaaacattacctggtatgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCTTGGCTTGGCATACCACCTCAACAAAAGTCTCAATCAGTTTCGGCAGCAT
species | Glycine max |
transcript | GLYMA06G05550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGGATGGAAGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCTEST: gi|16343525|gb|BI969120.1|BI969120
genomic: ATCAAGGATGGAAGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctga ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCT
EST: ATCAAGGATGGAAGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCTEST: gi|5677537|gb|AI938667.1|AI938667
genomic: ATCAAGGATGGAAGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctga ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCT
EST: ACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCTEST: gi|10848223|gb|BF070766.1|BF070766
genomic: ACTATATAAGGgtaatgctga ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCT
EST: ATCAAGGATGGAAGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGG ATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCT
genomic: ATCAAGGATGGAAGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGgtaatgctga ... atgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCT
tttctttttggttccataaaggttctattttaaacattacctggtatgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCTTGGCTTGGCATACCACCTCAACAAAAGTCTCAATCAGTTTCGGCAGCAT
ttctattttaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcaacttgagcagtcctatccattttgttggtggcatctatgctttctttttggttccataaaggttctattttaaacattacctggtatgttcacagATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCTTGGCTTGGCATACCACCTCAACAAAAGTCTCAATCAGTTTCGGCAGCAT
- - - - - -gcagtcc
- - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttacctg