1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aagtgtatgagtagtgaaattccctggataaaaggttctaactgtaattccttgtattaggttttctgattgtgtttttcatgatcaaatatcttgatagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAAGGTATACTGAAGAATTATGTCTTCGTTGCTGTCCTCACTTCCACTGTCG
species | Glycine max |
transcript | GLYMA06G04900.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAG GTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAAEST: gi|6747406|gb|AW317862.1|AW317862
genomic: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAGgtaaagttaa ... atcttgatagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAA
EST: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAG GTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAAEST: gi|10709354|gb|BF009078.1|BF009078
genomic: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAGgtaaagttaa ... atcttgatagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAA
EST: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAG GTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAA
genomic: CTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAGgtaaagttaa ... atcttgatagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAA
aattccttgtattaggttttctgattgtgtttttcatgatcaaatatcttgatagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAAGGTATACTGAAGAATTATGTCTTCGTTGCTGTCCTCACTTCCACTGTCG
ttctgat putative branch site (score: 3)
atcaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgtatgagtagtgaaattccctggataaaaggttctaactgtaattccttgtattaggttttctgattgtgtttttcatgatcaaatatcttgatagGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAAGGTATACTGAAGAATTATGTCTTCGTTGCTGTCCTCACTTCCACTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -tgtatga
- - - - - - - - - -ttccctg
- - - - - - - - - - - - - - - - - - -ctaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatc