1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttaagctatttttataagctcagataagctcttccaaccccccctattctgctttttagcttataaaacctgattaccattgctgtatatggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCTTGCAGATTTTGGGGTGTCAAAAATT
species | Glycine max |
transcript | GLYMA06G03970.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAG GGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCTEST: gi|37996920|gb|CF808509.1|CF808509
genomic: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactt ... ggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
EST: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAG GGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCTEST: gi|151399302|gb|EV269173.1|EV269173
genomic: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactt ... ggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
EST: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAG GGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
genomic: CATATTCTCTCTGGATTGGCATACTTACATGGTACCAAGACTATTCACAGgtaacaactt ... ggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCT
attctgctttttagcttataaaacctgattaccattgctgtatatggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCTTGCAGATTTTGGGGTGTCAAAAATT
acctgat putative branch site (score: 4)
ttcttt putative PPT
tttttagcttataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagctatttttataagctcagataagctcttccaaccccccctattctgctttttagcttataaaacctgattaccattgctgtatatggttctttagGGATATCAAAGGTGCAAACTTGTTGGTCGATGCATCAGGCAGTGTTAAGCTTGCAGATTTTGGGGTGTCAAAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccattgc