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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacttaatactataagttactagtaataactgtttcattatccatatttatcatttttcatgtatagtaattgaaattaatttggatattgcttgcatgcagTTTATAACATTTGGGTTTGCATGCACGCCACTATATTTGGTGTGGGAGAAAGCAATAGGGATACACGAGTGTAGGAGCCTGTGCAAGCGTGCTTTGGCGA

Basic information

species Glycine max
transcript GLYMA06G00690.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00690.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------gtacgtacttaatactataagttactagtaataactgtttcattatccatatttatcatttttca--tgtatagtaattgaaattaattt--ggatattgc----ttgcatgcagTTTATAACATTTGGGTTTGCATGCACGCCACTATATTTGGTGTGGGAGAAAGCAATAGGGATACACGAGTGTAGGAGCCTGTGCAAGCGTGCTTTGGCGA
                           ||    | ||  |   |  ||     | || | | |      ||  ||| | |   ||||  |  |||||     |    | || |    | || |||     |||| ||||||| || || ||||| || |||||||| || || || || |||||||||||||| |||||||| |||||||| | |||||                     
gtgctgatgctcatccaccaggcaaccaccctatcaaacccccatattttctttgatcaatttaattaaattaataatcagagttttcgagttgtattcctgtgcggaatagtcacagCATGTTGTGGTGTTGC-TGCAGTTCATCACCTTTGGATTCGCATGCACACCTCTGTACTTCGTGTGGGAGAAAGCGATAGGGATGCACGAGTGCAAGAGCC---------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcatttttcatgtatagtaattgaaattaatttggatattgcttgcatgcagTTTATAACATTTGGGTTTGCATGCACGCCACTATATTTGGTGTGGGAGAAAGCAATAGGGATACACGAGTGTAGGAGCCTGTGCAAGCGTGCTTTGGCGA
                           aattaat  putative branch site (score: 3)
     atttttcatgtatagt  TA-rich tract