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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcatattataacatttgattttttaatcttttatacttgataatgtaagcatttattttgtccatctgagtcatgatctacttagttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG

Basic information

species Glycine max
transcript GLYMA06G00230.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209705954|gb|BW661771.1|BW661771
EST:     GCATGTAATCGTGCTGATTACCTGGAGAGGACTATTAATTCTGTATTGAA                         ATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
genomic: GCATGTAATCGTGCTGATTACCTGGAGAGGACTATTAATTCTGTATTGAAgtatgcatca ... agttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataatgtaagcatttattttgtccatctgagtcatgatctacttagttttacagATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAG
 acttgat  putative branch site (score: 5)
       taagcatttatttt  TA-rich tract