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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtgttgctatatatgggcattgccaccagtcccctttttctgaaaagttacaccttttctacttttgtcttatactgaaaaattaaatttttgttaacgtttatcatcggaatagttttgatgaactataacctgcatacaaatttcagTTCAAAGGATATCTTGATGCGGGTAATAGCACAGAGTCTTCCTCCATCGTCAACTCTTGTTGAGAAG

Basic information

species Glycine max
transcript GLYMA05G38140.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G38140.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 3'ss of exon 7
gtgagtgtgt-tgctatatatgggcattgccaccagtcccctttttctgaaaagttacaccttttctacttttgtcttatactgaaaaattaaatttttgtt--aacgtttatcatcggaatagttttgatgaactataacctgcatacaaatttcagTTCAAAGGATATCTTGATGCGGGTAATAGCACAGAGTCTTCCTCCATCGTCAACTCTTGTTGAGAAG
|||||| | | | | ||| |   |||      |   || |||||| ||   || |        |||| |||||   ||  | |||| | ||   ||   |||  |  | ||||  |     ||| ||       || |    |  | ||   | ||||||||||||||||| |||||||||| |||||||| | ||||| ||||   || ||||  || ||||||
gtgagtctctcttcgataaaattgcac-attgcagttctccttttactttcaaatggagatagttctccttttactttgaaatgaagatttgtgttaaagttctatagcttatatttcacttagattatgaatcctctccatttaacacttttgtcagTTCAAAGGATATCCTGATGCGGGTCATAGCACAAAATCTTCATCCAGAATCCACTCCAGTGGAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacgtttatcatcggaatagttttgatgaactataacctgcatacaaatttcagTTCAAAGGATATCTTGATGCGGGTAATAGCACAGAGTCTTCCTCCATCGTCAACTCTTGTTGAGAAG
                                          atacaaattt  TA-rich tract