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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaatgtttgttcctggctcttaaccatcattttttttgtctcattccaatgaatgtaactgggatgattttacaaatttctgtagTTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG

Basic information

species Glycine max
transcript GLYMA05G37810.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37810.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G11440.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------gtg-agttaatgtttgttcctggctcttaaccatcattttttttgtctc-attccaatgaatgtaa-----ctgggatgattttacaa--atttct----gtagTTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG
                                 ||| | || ||| ||  || |   ||||| | |||  | ||||| | |  | |     |||  | |     ||  |||||| ||   |  ||| ||      || |    ||||||||| |||| |||||| | |||||||| ||||||||||| ||||||||  | || || |||||||| || |||
gtgtgtttcttcactgcttcatcccataacaatgtgcactttatgatt-ctcttcaatcttagcaatctgtatttttatttttaatatggagaacctgagaccacttagatgatattctgataattgctcctaacagCTTACCTGTGGAGGACTAGCGGGATCTGCTGCTGCTTTCTTCACAACCCCATTTGATGTAGTAAAAACAAGATTACAAACTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345824|gb|BI971419.1|BI971419
EST:     GCTTGAAGCAAGTGATGCCATCTAGTATTCAACCCAACACATTTCAGACT                         TTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCT
genomic: GCTTGAAGCAAGTGATGCCATCTAGTATTCAACCCAACACATTTCAGACTgtgagttaat ... atttctgtagTTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCT
EST: gi|58017466|gb|CX704208.1|CX704208
EST:     GCTTGAAGCAAGTGATGCCATCTAGTATTCAACCCAACACATTTCAGACT                         TTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCT
genomic: GCTTGAAGCAAGTGATGCCATCTAGTATTCAACCCAACACATTTCAGACTgtgagttaat ... atttctgtagTTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCT
EST: gi|8284513|gb|BE022072.1|BE022072
EST:     GCTTGAAGCAAGTGATGCCATCTAGTATTCAACCCAACACATTTCAGACT                         TTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCT
genomic: GCTTGAAGCAAGTGATGCCATCTAGTATTCAACCCAACACATTTCAGACTgtgagttaat ... atttctgtagTTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtctcattccaatgaatgtaactgggatgattttacaaatttctgtagTTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG
                      atgtaac  putative branch site (score: 3)
                                              tttctgt  putative PPT
                                 atgattttacaaattt  TA-rich tract