Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcttcctcttctgtctcaagtcaaaatatatattgttcactttctagcggaaggagtttgtactaattttattattctttttatttgtagGGTCTGTGCATGCATGCAG

Basic information

species Glycine max
transcript GLYMA05G37590.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720018|gb|BW651100.1|BW651100
EST:     CAAGAGGCTTCTCAGCTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGCTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatttgtagGGTCTGTGCATGCATGCAG
EST: gi|7925321|gb|AW831408.1|AW831408
EST:     CAAGAGGCTTCTCAGCTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCAC                         GGTCTGTGCATGCATGCAG
genomic: CAAGAGGCTTCTCAGCTGCTGTCTTGTTTGGCTGACTTTGTGTACTGCACgtaaggcttc ... ttatttgtagGGTCTGTGCATGCATGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactttctagcggaaggagtttgtactaattttattattctttttatttgtagGGTCTGTGCATGCATGCAG
                         tactaat  putative branch site (score: 1)
                               ttttattattcttttt  CT-rich tract
                   agtttgtactaatttt  TA-rich tract