1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcgaactgtgatccatgtagctgacctgacttagtgtgataaggctttgttgttgtcgtcatgttactttggtaaaattttgtactgtttgtatatacagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAG
species | Glycine max |
transcript | GLYMA05G36850.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAG GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGAEST: gi|19346907|gb|BM891795.1|BM891795
genomic: GGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAGgtattattcc ... gtatatacagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGA
EST: AGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAG GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGAEST: gi|298193906|gb|HO040554.1|HO040554
genomic: AGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAGgtattattcc ... gtatatacagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGA
EST: AGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAG GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGAEST: gi|261497131|gb|GT185199.1|GT185199
genomic: AGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAGgtattattcc ... gtatatacagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGA
EST: AGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAG GTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGA
genomic: AGCAGATGGGCATATTGCGGCATTGCGTAAACTCAATGATCCTAAAATAGgtattattcc ... gtatatacagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGA
tttgttgttgtcgtcatgttactttggtaaaattttgtactgtttgtatatacagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAG
tttggtaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgaactgtgatccatgtagctgacctgacttagtgtgataaggctttgttgttgtcgtcatgttactttggtaaaattttgtactgtttgtatatacagGTTGTGAGGTTTATAACTTGGGAACAGGAAAGGGAACATCTGTTTTGGAGATGGTAAACGCTTTTGAACAGGCCTCTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -aactgtg
- - - - - - ccatgta
- - - - - - - - - - ctgacct
- - - - - - - - - - - - - - - -tagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt