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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG

Basic information

species Glycine max
transcript GLYMA05G36620.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36620.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 3'ss of exon 6
gtatggtgccattattcaatttgcattaaagggcatgatgcgtgtttttcttctaaatctaaaatgcatgactgtagtgaactatgacggggttgactcgaattcactgctttttcttaata-cagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG
                              |    |||   |      ||    || |   | | |      | |   ||| | |       |  ||| |  ||| || || |  ||||| | |||||||| ||||| || ||||||||||||||||| ||||| |  || ||||||||||||||   |||||| |||||||| |||||
------------------------------gtatctga-atgcaaacctcaatcaagttctacaagttctgttttg--gaattgttgtaatctc-actggggttctctcctat--cttaacatcagGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAATTTGATCTTAATGGAATCCCTCCAGCTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314531|gb|FK006345.1|FK006345
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAATCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|254333979|gb|GR848897.1|GR848897
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|7147560|gb|AW509482.1|AW509482
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAC                         GTTTTCGAATGCGAGATGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|26058351|gb|CA801265.1|CA801265
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|192314502|gb|FK006344.1|FK006344
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAATCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|298181367|gb|HO022806.1|HO022806
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTT
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTT
EST: gi|298196006|gb|HO044397.1|HO044397
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|298172742|gb|HO019782.1|HO019782
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
EST: gi|298169283|gb|HO020643.1|HO020643
EST:     CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAG                         GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTATCAGGACCAGCAGACTACAGTCTCCATTCAGgtatggtgcc ... cttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtagtgaactatgacggggttgactcgaattcactgctttttcttaatacagGTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG
                                            tcttaat  putative branch site (score: 3)
                                ttcactgctttttctt  CT-rich tract
                                        tttttcttaataca  TA-rich tract