1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAATTTGAACTGTCTGGAATTCCTCCAGCTCCAAG
species | Glycine max |
transcript | GLYMA05G36600.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAAEST: gi|254318124|gb|GR832292.1|GR832292
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
EST: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAAEST: gi|254344089|gb|GR850999.1|GR850999
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
EST: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAAEST: gi|48575122|gb|CO036245.1|CO036245
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
EST: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAG GTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
genomic: CTCAGGTGTTCACCACCTACCAGGATCAGCAGACTACCGTCTCCATTCAGgtatggctca ... caatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAA
aattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAATTTGAACTGTCTGGAATTCCTCCAGCTCCAAG
tgctttttctc CT-rich tract
tttaataatttgatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggctcattatctgactgcataaaagtgcacgatgcttgtttttcttctaaatccaaaattcatgactgtgtagtggactttaataatttgatgctttttctcaatacatagGTTTTTGAAGGTGAGAGGAGTCTCACAAAGGATTGCCGTCTGCTTGGGAAATTTGAACTGTCTGGAATTCCTCCAGCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC