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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcaatatctatcatatggaattacctggtactgagttgtttcattgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAG

Basic information

species Glycine max
transcript GLYMA05G35210.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35210.1 (Glycine max), 3'ss of exon 6
lower sequence: AT1G49040.1 (Arabidopsis thaliana), 3'ss of exon 23
-------gtaagtttcaatatctatcatatggaattacctggtactgagttgtttcattgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAG
         |  | |  | || ||      || |   | |  ||| || | ||   ||  |  ||| | | ||    |  | || |      | |   || |  |  ||||||||| || |||||||| ||||| ||||||||||||||  | |||||||| ||||| |||||| |
cacactttcatttcttgaaatttagatcgaggtaaaccttaatacagaatggt--aatgacaatctagcatccccttttggttgct------tcc---tgaatttgagcagGTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGG

upper sequence: GLYMA05G35210.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv17s0000g03950.t01 (Vitis vinifera), 3'ss of exon 23
gtaagtttcaatatctatcatatggaat-tacctggtactgagttgtttcattgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAG
  || || ||||    |  | ||  | | ||    | | | |  ||   || ||   |     | |  |   | ||| ||    | ||  |    || | ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| | 
--aacttccaatgatcaatacataaattctataaagcattaaactgcagcactggaatagaaaagcatg---gtggttatcatttttttttccataactgtgcagGTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgccttctggtacccagaatgaggtgatatgctgttcatgtgcaaatatgcagGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAG
                                             aaatat  TA-rich tract