Sequence
atgc intronic sequence ATGC exonic sequence...agaatgcttgtttctgtaatctataccaaacttaaaattgaaacaattatgatggaaggggcttttctttttggataaattgcaatttactttttgccagATGTTTTCGTGATGAAGATTTACGAGCTGATAGACAACCTGAGTTCACCCAGCTAGATATGGAAATGGCCTTTACTCCTTATGAGGATATGTTGATGCTT
Basic information
species | Glycine max |
transcript | GLYMA05G34820.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G34820.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G33760.1 (Arabidopsis thaliana), 3'ss of exon 6
--------------------------------------------------agaatgcttgtttctgtaatctataccaaacttaaaattgaaacaattatgatggaaggggcttttctttttggataaattgcaatttactttttgccagATGTTTTCGTGATGAAGATTTACGAGCTGATAGACAACCTGAGTTCACCCAGCTAGATATGGAAATGGCCTTTACTCCTTATGAGGATATGTTGATGCTT
|| || || | | || | | | ||| | | | | ||||| || | || ||| | || || ||| | | |||||||||| | ||||||||| || |||||||||| || ||||| || || ||||| |||||||||||||| || | ||| ||||| ||| ||| |||
gtatatatatgatctttggcacttaagtttggttcagcataagcctccctgacataaatggctc-atcaccttcatttaccaccaaaa-gcaggactcctgatgcaaatgatttctctctc---atgcgtt-tgttttttctactatcagATGTTTTAGAGATGAAGATCTAAGAGCTGATAGGCAGCCTGAATTTACTCAGCTTGATATGGAAATGGCTTTCATGCCTATGGAGGACATGCTGAAGCTG
upper sequence: GLYMA05G34820.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv03s0088g00500.t01 (Vitis vinifera), 3'ss of exon 6
-------------------------------------------------------------------------------------------agaatgcttgtttctgtaatctataccaaacttaaaattgaaacaatta-tgatggaaggggcttttctttttggat--aaattgcaatttactttttgc------cagATGTTTTCGTGATGAAGATTTACGAGCTGATAGACAACCTGAGTTCACCCAGCTAGATATGGAAATGGCCTTTACTCCTTATGAGGATATGTTGATGCTT
||| | ||| | | || | || || || |||| ||| ||| || | | | ||||| | ||| ||||| |||||||||||| ||||||||| | |||| |||||||| ||||||||||| ||| | ||||||||| |||| || ||||||| ||||||||| ||| |||
gtagtttttttattacaagctgtttttgctggattcagtccttgtatgcttattgcttatttctactgtgctatgagttttctgcttccagtgaagatatagctctacagtataggtta--ttttcgtttataatgattaatgagtcaagacgcctataaaaaaaaaacaaaattaaagtttgcttttctttgtttacagATGTTTTCGAGATGAAGATCTTAGAGCAGATAGACAGCCTGAGTTCACACAGTTGGATATGGAATTGGCTTTCACTCCTTTGGAGGATATGCTGAGGCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attatgatggaaggggcttttctttttggataaattgcaatttactttttgccagATGTTTTCGTGATGAAGATTTACGAGCTGATAGACAACCTGAGTTCACCCAGCTAGATATGGAAATGGCCTTTACTCCTTATGAGGATATGTTGATGCTT
tttacttttt CT-rich tract
ataaattgcaatttac TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaatgcttgtttctgtaatctataccaaacttaaaattgaaacaattatgatggaaggggcttttctttttggataaattgcaatttactttttgccagATGTTTTCGTGATGAAGATTTACGAGCTGATAGACAACCTGAGTTCACCCAGCTAGATATGGAAATGGCCTTTACTCCTTATGAGGATATGTTGATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-gaatgct
- - - - -gtttctg
- - - - - - - - - - - - -ccaaact
- - - - - - - - - - - - - - - - - - - -gaaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - gaagggg