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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctataatatttaatcaatgtgtagcaaaattattgtacaatcacaaatcctttcactttaaaattcaccgtgacattaacatattgcattcggtggcagtgaccgacattaattaatttctatgaaccttactctatagGTGAAACTTTGGAGCAATTTCCAAACAATCATCAAGCATCACTAATAGCATATGATCAGAACGACTATTTTGGTGATAAATCTGCCGAAGTTGGTAACTA

Basic information

species Glycine max
transcript GLYMA05G34760.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064522|gb|BU579295.1|BU579295
EST:     GTTAGATGGAATGACTTGGAGGAAATTGATGCGGCTTTCTTAACTTCAAT                         GNG-TACTTTGGAGCAATTTCCAAACAATCATCAAGCATCACTAATAGCA
genomic: GTTAGATGGAATGACTTGGAGGAAATTGATGCGGCTTTCTTAAC-CCAAGgtatgttcta ... tactctatagGTGAAACTTTGGAGCAATTTCCAAACAATCATCAAGCATCACTAATAGCA
EST: gi|120494583|gb|EH222750.1|EH222750
EST:     TGTTAGATGGAATGACTTGGAGGAAATTGATGCGGCTTTCTTAACCCAAG                         GTGAAACTTTGGAGCAATTTCCAGACAATCATCAAGCATCACTAATAGCAT
genomic: TGTTAGATGGAATGACTTGGAGGAAATTGATGCGGCTTTCTTAACCCAAGgtatgttcta ... tactctatagGTGAAACTTTGGAGCAATTTCCAAACAATCATCAAGCATCACTAATAGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcattcggtggcagtgaccgacattaattaatttctatgaaccttactctatagGTGAAACTTTGGAGCAATTTCCAAACAATCATCAAGCATCACTAATAGCATATGATCAGAACGACTATTTTGGTGATAAATCTGCCGAAGTTGGTAACTA
                                         accttac  putative branch site (score: 3)
                                          ccttactct  CT-rich tract
                     acattaattaatttct  TA-rich tract